Real-time, interactive website for US-county level Covid-19 event risk assessment.
Identifieur interne : 000334 ( Main/Exploration ); précédent : 000333; suivant : 000335Real-time, interactive website for US-county level Covid-19 event risk assessment.
Auteurs : Aroon Chande [États-Unis] ; Seolha Lee [États-Unis] ; Mallory Harris [États-Unis] ; Troy Hilley [États-Unis] ; Clio Andris [États-Unis] ; Joshua S. Weitz [États-Unis]Source :
- medRxiv : the preprint server for health sciences ; 2020.
Abstract
Large events and gatherings, particularly those taking place indoors, have been linked to multi-transmission events that have accelerated the pandemic spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To provide real-time, geo-localized risk information, we developed an interactive online dashboard that estimates the risk that at least one individual with SARS-CoV-2 is present in gatherings of different sizes in the United States. The website combines documented case reports at the county level with ascertainment bias information obtained via population-wide serological surveys to estimate real time circulating, per-capita infection rates. These rates are updated daily as a means to visualize the risk associated with gatherings, including county maps and state-level plots. The website provides data-driven information to help individuals and policy-makers make prudent decisions (e.g., increasing mask wearing compliance and avoiding larger gatherings) that could help control the spread of SARS-CoV-2, particularly in hard-hit regions.
DOI: 10.1101/2020.08.24.20181271
PubMed: 32869038
PubMed Central: PMC7457615
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Real-time, interactive website for US-county level Covid-19 event risk assessment.</title><author><name sortKey="Chande, Aroon" sort="Chande, Aroon" uniqKey="Chande A" first="Aroon" last="Chande">Aroon Chande</name><affiliation wicri:level="2"><nlm:affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Applied Bioinformatics Laboratory, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Applied Bioinformatics Laboratory, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Lee, Seolha" sort="Lee, Seolha" uniqKey="Lee S" first="Seolha" last="Lee">Seolha Lee</name><affiliation wicri:level="2"><nlm:affiliation>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Harris, Mallory" sort="Harris, Mallory" uniqKey="Harris M" first="Mallory" last="Harris">Mallory Harris</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biology, Stanford University, Palo Alto, CA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Stanford University, Palo Alto, CA</wicri:regionArea><placeName><region type="state">Californie</region><settlement type="city">Stanford (Californie)</settlement></placeName><orgName type="university">Université Stanford</orgName></affiliation></author><author><name sortKey="Hilley, Troy" sort="Hilley, Troy" uniqKey="Hilley T" first="Troy" last="Hilley">Troy Hilley</name><affiliation wicri:level="2"><nlm:affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Andris, Clio" sort="Andris, Clio" uniqKey="Andris C" first="Clio" last="Andris">Clio Andris</name><affiliation wicri:level="2"><nlm:affiliation>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>School of Interactive Computing, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Interactive Computing, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Weitz, Joshua S" sort="Weitz, Joshua S" uniqKey="Weitz J" first="Joshua S" last="Weitz">Joshua S. Weitz</name><affiliation wicri:level="2"><nlm:affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>School of Physics, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Physics, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32869038</idno><idno type="pmid">32869038</idno><idno type="doi">10.1101/2020.08.24.20181271</idno><idno type="pmc">PMC7457615</idno><idno type="wicri:Area/Main/Corpus">000361</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000361</idno><idno type="wicri:Area/Main/Curation">000361</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000361</idno><idno type="wicri:Area/Main/Exploration">000361</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Real-time, interactive website for US-county level Covid-19 event risk assessment.</title><author><name sortKey="Chande, Aroon" sort="Chande, Aroon" uniqKey="Chande A" first="Aroon" last="Chande">Aroon Chande</name><affiliation wicri:level="2"><nlm:affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Applied Bioinformatics Laboratory, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Applied Bioinformatics Laboratory, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Lee, Seolha" sort="Lee, Seolha" uniqKey="Lee S" first="Seolha" last="Lee">Seolha Lee</name><affiliation wicri:level="2"><nlm:affiliation>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Harris, Mallory" sort="Harris, Mallory" uniqKey="Harris M" first="Mallory" last="Harris">Mallory Harris</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biology, Stanford University, Palo Alto, CA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Stanford University, Palo Alto, CA</wicri:regionArea><placeName><region type="state">Californie</region><settlement type="city">Stanford (Californie)</settlement></placeName><orgName type="university">Université Stanford</orgName></affiliation></author><author><name sortKey="Hilley, Troy" sort="Hilley, Troy" uniqKey="Hilley T" first="Troy" last="Hilley">Troy Hilley</name><affiliation wicri:level="2"><nlm:affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Andris, Clio" sort="Andris, Clio" uniqKey="Andris C" first="Clio" last="Andris">Clio Andris</name><affiliation wicri:level="2"><nlm:affiliation>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>School of Interactive Computing, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Interactive Computing, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Weitz, Joshua S" sort="Weitz, Joshua S" uniqKey="Weitz J" first="Joshua S" last="Weitz">Joshua S. Weitz</name><affiliation wicri:level="2"><nlm:affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>School of Physics, Georgia Institute of Technology, Atlanta, GA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Physics, Georgia Institute of Technology, Atlanta, GA</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author></analytic><series><title level="j">medRxiv : the preprint server for health sciences</title><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Large events and gatherings, particularly those taking place indoors, have been linked to multi-transmission events that have accelerated the pandemic spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To provide real-time, geo-localized risk information, we developed an interactive online dashboard that estimates the risk that at least one individual with SARS-CoV-2 is present in gatherings of different sizes in the United States. The website combines documented case reports at the county level with ascertainment bias information obtained via population-wide serological surveys to estimate real time circulating, per-capita infection rates. These rates are updated daily as a means to visualize the risk associated with gatherings, including county maps and state-level plots. The website provides data-driven information to help individuals and policy-makers make prudent decisions (e.g., increasing mask wearing compliance and avoiding larger gatherings) that could help control the spread of SARS-CoV-2, particularly in hard-hit regions.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32869038</PMID><DateRevised><Year>2021</Year><Month>01</Month><Day>10</Day></DateRevised><Article PubModel="Electronic"><Journal><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Aug</Month><Day>29</Day></PubDate></JournalIssue><Title>medRxiv : the preprint server for health sciences</Title><ISOAbbreviation>medRxiv</ISOAbbreviation></Journal><ArticleTitle>Real-time, interactive website for US-county level Covid-19 event risk assessment.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">2020.08.24.20181271</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1101/2020.08.24.20181271</ELocationID><Abstract><AbstractText>Large events and gatherings, particularly those taking place indoors, have been linked to multi-transmission events that have accelerated the pandemic spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To provide real-time, geo-localized risk information, we developed an interactive online dashboard that estimates the risk that at least one individual with SARS-CoV-2 is present in gatherings of different sizes in the United States. The website combines documented case reports at the county level with ascertainment bias information obtained via population-wide serological surveys to estimate real time circulating, per-capita infection rates. These rates are updated daily as a means to visualize the risk associated with gatherings, including county maps and state-level plots. The website provides data-driven information to help individuals and policy-makers make prudent decisions (e.g., increasing mask wearing compliance and avoiding larger gatherings) that could help control the spread of SARS-CoV-2, particularly in hard-hit regions.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chande</LastName><ForeName>Aroon</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Applied Bioinformatics Laboratory, Atlanta, GA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Seolha</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Harris</LastName><ForeName>Mallory</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biology, Stanford University, Palo Alto, CA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hilley</LastName><ForeName>Troy</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Andris</LastName><ForeName>Clio</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>School of City and Regional Planning, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Interactive Computing, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Weitz</LastName><ForeName>Joshua S</ForeName><Initials>JS</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Physics, Georgia Institute of Technology, Atlanta, GA, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D000076942">Preprint</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>08</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>medRxiv</MedlineTA><NlmUniqueID>101767986</NlmUniqueID></MedlineJournalInfo><CommentsCorrectionsList><CommentsCorrections RefType="UpdateIn"><RefSource>Nat Hum Behav. 2020 Nov 9;:</RefSource><PMID Version="1">33168955</PMID></CommentsCorrections></CommentsCorrectionsList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>9</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>9</Month><Day>2</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32869038</ArticleId><ArticleId IdType="doi">10.1101/2020.08.24.20181271</ArticleId><ArticleId IdType="pmc">PMC7457615</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Lancet. 2020 Mar 14;395(10227):e47</Citation><ArticleIdList><ArticleId IdType="pubmed">32113505</ArticleId></ArticleIdList></Reference><Reference><Citation>Clin Infect Dis. 2020 Jun 18;:</Citation><ArticleIdList><ArticleId IdType="pubmed">32556265</ArticleId></ArticleIdList></Reference><Reference><Citation>JAMA Intern Med. 2020 Jul 21;:</Citation><ArticleIdList><ArticleId IdType="pubmed">32692365</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2020 Sep 3;383(10):981-985</Citation><ArticleIdList><ArticleId IdType="pubmed">32726550</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2020 May 1;368(6490):489-493</Citation><ArticleIdList><ArticleId IdType="pubmed">32179701</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Infect Dis. 2020 Apr;93:284-286</Citation><ArticleIdList><ArticleId IdType="pubmed">32145466</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2020 Sep 8;117(36):22597-22602</Citation><ArticleIdList><ArticleId IdType="pubmed">32826332</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2020 Jun;26(6):1059-1066</Citation><ArticleIdList><ArticleId IdType="pubmed">32187007</ArticleId></ArticleIdList></Reference><Reference><Citation>IEEE Trans Vis Comput Graph. 2007 Nov-Dec;13(6):1224-31</Citation><ArticleIdList><ArticleId IdType="pubmed">17968068</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2020 Mar 26;382(13):1268-1269</Citation><ArticleIdList><ArticleId IdType="pubmed">32109011</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Med. 2020 Mar 26;:</Citation><ArticleIdList><ArticleId IdType="pubmed">32218525</ArticleId></ArticleIdList></Reference><Reference><Citation>J R Soc Interface. 2020 Jul;17(168):20200144</Citation><ArticleIdList><ArticleId IdType="pubmed">32693748</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2020 Aug;584(7821):425-429</Citation><ArticleIdList><ArticleId IdType="pubmed">32604404</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li><li>Géorgie (États-Unis)</li></region><settlement><li>Stanford (Californie)</li></settlement><orgName><li>Université Stanford</li></orgName></list><tree><country name="États-Unis"><region name="Géorgie (États-Unis)"><name sortKey="Chande, Aroon" sort="Chande, Aroon" uniqKey="Chande A" first="Aroon" last="Chande">Aroon Chande</name></region><name sortKey="Andris, Clio" sort="Andris, Clio" uniqKey="Andris C" first="Clio" last="Andris">Clio Andris</name><name sortKey="Andris, Clio" sort="Andris, Clio" uniqKey="Andris C" first="Clio" last="Andris">Clio Andris</name><name sortKey="Chande, Aroon" sort="Chande, Aroon" uniqKey="Chande A" first="Aroon" last="Chande">Aroon Chande</name><name sortKey="Harris, Mallory" sort="Harris, Mallory" uniqKey="Harris M" first="Mallory" last="Harris">Mallory Harris</name><name sortKey="Hilley, Troy" sort="Hilley, Troy" uniqKey="Hilley T" first="Troy" last="Hilley">Troy Hilley</name><name sortKey="Lee, Seolha" sort="Lee, Seolha" uniqKey="Lee S" first="Seolha" last="Lee">Seolha Lee</name><name sortKey="Weitz, Joshua S" sort="Weitz, Joshua S" uniqKey="Weitz J" first="Joshua S" last="Weitz">Joshua S. Weitz</name><name sortKey="Weitz, Joshua S" sort="Weitz, Joshua S" uniqKey="Weitz J" first="Joshua S" last="Weitz">Joshua S. Weitz</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/CovidStanfordV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000334 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000334 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= CovidStanfordV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32869038
|texte= Real-time, interactive website for US-county level Covid-19 event risk assessment.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32869038" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a CovidStanfordV1
| This area was generated with Dilib version V0.6.38. |  |